NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0016554

Scaffold Ga0335029_0016554


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0016554 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5643
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008616Metagenome / Metatranscriptome330Y
F008811Metagenome / Metatranscriptome327N
F012447Metagenome280Y
F014609Metagenome261Y
F023328Metagenome210N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0016554_1_225F014609N/AMINELIGIIGLLVTILVLTIRATVELTKMKSQLFPNGGSSLADKVTRLQIDVVKIRSTIDSINSQLGKKPTRKR
Ga0335029_0016554_1900_3129F023328GAGMTVFTPTYKVTIAGTIQTSTILQDATITYGRNDFFEATQPSYCNLELLNLDGTSPVVELLDTVVVEVQNSAGTFVKLFTGEVSGVYNRFEGAGLGGKPNTLQIQAIGALGLLVKRYAGAVAYPEELDGARIQRILEETLFVAWEDLSNTLTWNDFTTETWANYGVQGIDIIDPGRYEVLARPAEVEQAYELTDTTQQSGLGYLYDTPDFEIGYADAERRSANYTTNLIELDANLVNADIQTRLQTADIVNSVVIRYDDPVLEVVAQNDTSINNYGLLEEIRSTILAETVDATEQATNFVNYRGTPKTSLEAVSVNLAHSDMTNTVRDDLLAVTMDSLLYLDNIPVGLIPEGYFEGFVEGWTWTLGRKNLELTMSVSNSIYSTLDVQWEDYNSVIQWQNLDNATRWLDVI
Ga0335029_0016554_4373_4840F012447GAGMAKAIQLVKVDRDYNGLLRAFNKMDDIAKKDMQEIAGKLAERGANYAKGAANNAPYNVKQARAVAESIVIKAKDKAPSFSIGGKRPVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAQEWLKGYERIRDAWVASF
Ga0335029_0016554_4937_5242F008616AGGMLKLKLTWELETGEKFEEWTRPIELSLAEKELYAGKSIVKILIDESTPSNTLLLFLAHKIQQRVTKKIENFETWKSKVTDIAASDFETANFTKPEVLGEQQ
Ga0335029_0016554_5270_5641F008811N/ALSVNGNSYSEQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAGATPNSLYKVLWDGTESAPDTTIAFIMTLRTGVTLTGYVLPQYPSVTASGADVQTCSVSLQVVGIPTEDLTA

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