Scaffold Ga0335029_0016554

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0016554
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5643
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F012447	Metagenome	280	Y
F014609	Metagenome	261	Y
F023328	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0016554_1_225	F014609	N/A	MINELIGIIGLLVTILVLTIRATVELTKMKSQLFPNGGSSLADKVTRLQIDVVKIRSTIDSINSQLGKKPTRKR
Ga0335029_0016554_1900_3129	F023328	GAG	MTVFTPTYKVTIAGTIQTSTILQDATITYGRNDFFEATQPSYCNLELLNLDGTSPVVELLDTVVVEVQNSAGTFVKLFTGEVSGVYNRFEGAGLGGKPNTLQIQAIGALGLLVKRYAGAVAYPEELDGARIQRILEETLFVAWEDLSNTLTWNDFTTETWANYGVQGIDIIDPGRYEVLARPAEVEQAYELTDTTQQSGLGYLYDTPDFEIGYADAERRSANYTTNLIELDANLVNADIQTRLQTADIVNSVVIRYDDPVLEVVAQNDTSINNYGLLEEIRSTILAETVDATEQATNFVNYRGTPKTSLEAVSVNLAHSDMTNTVRDDLLAVTMDSLLYLDNIPVGLIPEGYFEGFVEGWTWTLGRKNLELTMSVSNSIYSTLDVQWEDYNSVIQWQNLDNATRWLDVI
Ga0335029_0016554_4373_4840	F012447	GAG	MAKAIQLVKVDRDYNGLLRAFNKMDDIAKKDMQEIAGKLAERGANYAKGAANNAPYNVKQARAVAESIVIKAKDKAPSFSIGGKRPVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAQEWLKGYERIRDAWVASF
Ga0335029_0016554_4937_5242	F008616	AGG	MLKLKLTWELETGEKFEEWTRPIELSLAEKELYAGKSIVKILIDESTPSNTLLLFLAHKIQQRVTKKIENFETWKSKVTDIAASDFETANFTKPEVLGEQQ
Ga0335029_0016554_5270_5641	F008811	N/A	LSVNGNSYSEQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAGATPNSLYKVLWDGTESAPDTTIAFIMTLRTGVTLTGYVLPQYPSVTASGADVQTCSVSLQVVGIPTEDLTA