Scaffold Ga0335029_0010041

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0010041
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7305
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F001754	Metagenome / Metatranscriptome	641	Y
F003542	Metagenome / Metatranscriptome	480	Y
F011393	Metagenome / Metatranscriptome	291	Y
F018718	Metagenome / Metatranscriptome	233	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y
F084218	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0010041_1310_1618	F011393	N/A	MGEQVAYNKCEHCNVELHTNDAGEYYPVVNRLDKFTLIRGSYIPVGNHFQYPRNWGKKKGATILLETRIADKIKVLKDTEAELSKLQACLEKVQEWDGDILN
Ga0335029_0010041_2085_2312	F018718	N/A	MTIREFYVKNYPSDDMGDGINPTATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWLK
Ga0335029_0010041_4485_4751	F001754	N/A	MSNNPKFEVLVSYTDFLGKKHNIVCKSRPALKRANEFLKMFKTESVAINKILSEYPVVMGKFPTKYHSEIKRELASAGFSTVSNFLIK
Ga0335029_0010041_5316_5537	F084218	N/A	MSDSHPVWDAGMNVEREIKAKIHALVGIHREDGIGLCDELKDIAGPDYTDYNEDGFGLKYRVIHSWFKPYIGE
Ga0335029_0010041_6169_6528	F003542	N/A	MSKVNFDYDLFSEKIGYDSVNKQYLIRVYEYLVDSMDTKPAPTWSGIMRRMLGDNPKGVNPSSYYSSVRRCLKEIGVCYFDSTKRHMVKGRNWDRFVSDEDWSWFIMRTGSCEYSTIIK
Ga0335029_0010041_6537_6698	F031098	N/A	MKTYYDIAILSHSGDTIFIKGVSYSMMMKIANDNPQLQKVEILKEYSKKISKY
Ga0335029_0010041_6991_7305	F037728	N/A	MKRLNITNFTKRVMEIHSDFFMIKHCSDRGDKYLMGIDTNDVISFKQLEPKHYKMAIDKAPNEDGNYHIWLWDMGLNISYPMSIERDELSNSSTFTKFLNHMLKL
Ga0335029_0010041_913_1308	F000785	N/A	MRYFSYLCISGKSIFMRVTNKRGMKFDCTKLMNWAQDLLGPSKCTAIAFTWDKDEESCGWYNWDETIWINLASCKRMITVQKTILHEWTHAQQTFRWYNHYNVKFGYKNNPYELEARANEKLVKRAYKKKK