Scaffold Ga0335029_0009259

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0009259
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7630
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (41.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F029368	Metagenome / Metatranscriptome	188	Y
F068809	Metagenome / Metatranscriptome	124	Y
F071172	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0009259_4454_4618	F029368	N/A	MRYNPATDRAQSIDAIAEQCRNAILKADACRAIDAAYDEILQFYRWEDDVLIPA
Ga0335029_0009259_6749_6964	F071172	GGAG	MTLTSQQLDQLVENYAERIVDEMDVKCLIQFAYDTIVENLSHLNEEDVLNEISYVYDEDVIQELVESVTVE
Ga0335029_0009259_7115_7261	F068809	GAG	MNYLTPDDLNNLIRLVEDNNQYNDDEDKEFWDDILIRLQQTYRHCLDD
Ga0335029_0009259_7412_7540	F001968	GAGG	MFDELWSEIQEAPGEIFDLDIPELRDEEKFDVNEYLNANYDY