NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0008743

Scaffold Ga0335029_0008743


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0008743 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7872
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002130Metagenome / Metatranscriptome591Y
F040085Metagenome162Y
F050192Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0008743_2502_2690F040085GAGVNLPDKLAIRAAYETAVVALLNANPETTEEQAEAFVDAMAQLIFTTMQTYFEEEKNVSSYSN
Ga0335029_0008743_7492_7728F050192N/AMIKRPFKPWYPKHTGPLEPDRTIILMGHARELLTTWEVTKDKALVDRHLATMDKRHGPGAEQAIRQYMRQVAKYERCA
Ga0335029_0008743_9_536F002130N/AMGVVAFAGYFLWQNQTFMMDAYKESKKLPEINTSRVDEASAMLFKKTGATVVAVFKVNPLFNSRVLYKAYTKDGRDKSIEDIDVGLFSQNSANNADVIKLMTNEMPCSEYRYAQSEVGLWYIEKGVTFTCRVSIPPDSHRFVGQITVGWSEQPQSLEQVKFMLEIASAMLTKRGN

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