NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0006331

Scaffold Ga0335029_0006331


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0006331 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9295
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025232Metagenome / Metatranscriptome202Y
F028461Metagenome191N
F049572Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0006331_2925_3152F025232N/AMENVNEKILEDYRLVVTRLDLMKAEVDEVNKENKRLKKAFTELLEYYQLELDRRDSTHDRQEIDYYWLEKAGILD
Ga0335029_0006331_4690_5532F028461N/AMRKKTNAATYYKNPALQESIIRYYKEKQLNFVVKHSNYNTQIIGSEATLKFIQTEHPIRVFVAYNKIVKDLKESPKTVEILQGEWSTDNFDSRNGLKPAFYKKILNLDISSAYPYCLWINKLITQDTFNYLMAMPKTERLPAIGMIAKKSVWITYTAGKAEEWELKEGFYANIFFYVIQQITDLMAWAAEIAGDSFLFYWVDGIFLKPTIPKKKLDEITRIFSEQGYYFKYEKVENCNIVRDGDKLLINMIKNGQEKPYQMYDKNLARNFTKVLQQLENA
Ga0335029_0006331_6350_6736F049572N/AMEQNNQLVRANDVNATITPEMLEASANLKQLKAAINLSPEYIELVKPGESFRGIFWGFSEIQVNDQVTGEQRTIPAAAFLVDKCIRINAGVALVGECRKSGIDKGTPVEVTFKEKKGNLKIYSLTLLA
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