Scaffold Ga0335029_0005262

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0005262
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10190
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020647	Metagenome / Metatranscriptome	222	Y
F026879	Metagenome	196	Y
F027772	Metagenome / Metatranscriptome	193	Y
F030428	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0005262_1702_1920	F030428	AGG	MKSKNTYENLTRICGGNITPQALKQVLAEIEFQTTAVKQEFWQYMFEMGETFGDIQSFVVQDRELSKEKIYE
Ga0335029_0005262_5793_5990	F027772	N/A	MIDNNKLAELETQIGLVHDIMRHTDAKDPRMESLRELLAVMYQELIKLQPPRDKLDKPLLSDDSL
Ga0335029_0005262_644_1030	F026879	AGGAGG	MLRQLAVILLLSSNLALAQDLPKELYMPNESGGYIVLTTDACPNAGAVKLGYTYRAYATESDSEQPATHEGCWDSPSIADAPKLQGVRIIPLVNLWFDGDMATFPQTMFGPEKKRWNIAPTIEVKPNV
Ga0335029_0005262_8943_9152	F020647	AGGA	MFETCVKQLVTITLDKPVTTEFYNGTLFVSTITEDQARRVFHALSKSLGLGKVQISPIGDTGEFAYDFV