NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0004677

Scaffold Ga0335029_0004677


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0004677 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10845
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011394Metagenome / Metatranscriptome291Y
F042904Metagenome / Metatranscriptome157Y
F072349Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0004677_3179_3385F042904N/AMAEMTVMDEIIGEVSEDLYKKWVSAMPDDEKNQQAFSAMSKNAHETTLFVIQGFMNKFNAAAEELKDK
Ga0335029_0004677_370_606F072349AGGAGGMDKVLCYSCNKSKNELAVKKSSLLTINLLLCQACSDAKFEPRWTIILAGRQNGSDYVKDFIIKRKYVGLEISASELLV
Ga0335029_0004677_57_377F011394AGGMFIDKNKNHFQNGINQWTGEPNKPVFYNKAMALKIRELAKPTNALQMDIVKYPEFLAIRLYEDNFAQFDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNNG
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