Scaffold Ga0335029_0002487

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0002487
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14693
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F006988	Metagenome	360	Y
F037735	Metagenome	167	N
F063702	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0002487_2396_2620	F001332	AGG	MNEELAAMTAVITKAEIAMKAAQWQIERQAEDVAALRKALVELAYVAEENGVYLSNLTKGTQDTIVAIRLGGFK
Ga0335029_0002487_3658_4128	F006988	AGGA	MAIRPYTGNKDAVHAAKREGTKVFVDYCCYLFGVTNIGIFNDRNMVGTTPPKKSVHATWRAVDLKGTPEQRFKLIDFLYTHRDILCIEEIHDYAGTYKNNPKGWGAGYRCDRDEWRVYDKNTIGSKGAQWVHVEVAPLLADHPDVVHHAFKTIMGS
Ga0335029_0002487_9309_9485	F063702	AGCAGG	MKYTIISDKIGTVGAEFVPGAGTNIEALLAHGFIESDEIVSDKPTPKSAKTKAHTKKD
Ga0335029_0002487_9488_9847	F037735	N/A	MTVYTDLFNEAIDDLAATLATITGMRVVFDPEKINPPCVFIDAPSFDAFNYNIVTMNFSVKVVTLGPGNLDGLRNVLSMCAKVLAKNVAVKSGRPGYIPIGGQTFAAYDLSIDVQAQAG