NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0002449

Scaffold Ga0335029_0002449


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0002449 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14803
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (64.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009397Metagenome / Metatranscriptome318Y
F011368Metagenome291Y
F024772Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0002449_3279_3548F011368N/AMTHTLQHRDLAGSHLSPGDHCLVTEHNRIILARVIKLYESSNQLQLQPVRSDAGGRRSTPNQKRIRRECYNVYRIADSEITMSILRGAV
Ga0335029_0002449_6356_6601F009397N/AMVKKYLTTINNCMNEQYLLPMARNTRTGETVKTQDLNGVRFTQKQRVLAESAADQCAAKMTARTGDTWRGFVRLYTPSERR
Ga0335029_0002449_9765_10109F024772N/AMRAKEFITEREMPKPVSRAMSTAYHFPTMPSSDAYQAYRFGIAMADHKTHSKYGPSSNHAVIVAYTTEEEEIIKGAESEMGHKGKLLADRGSHESNSTETQSPVAKLKRNRYGV
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