Scaffold Ga0335029_0002266

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0002266
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15293
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005562	Metagenome / Metatranscriptome	396	Y
F036143	Metagenome	170	N
F104708	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0002266_2735_3058	F104708	GAG	MVNPTDHLDQALANLWANTRPKATDVLIRNLRAHAYSYAMDDAALCEDLRQAIGRLEHPSSLEPKKQSIIDRLDDIVQDLHGLGLTQVGGEIDQLLIAHIEALRGAK
Ga0335029_0002266_4601_4717	F005562	AGG	MAKPFIQIDDLLREMTEEEYEALLASGWTEEGLDDLAG
Ga0335029_0002266_8488_9096	F036143	N/A	MYLKGNVKKMPASASYQVYGIQEALAEINKVDRVLRRQITKDIQSGAGTRLVTAARSFIPTAPPLSRMGNGNMIKGRDGTGWSRARVIAGIRTVVGKRGQRARTVRFSNGRTADFKATQYQLLVLQQRDVAGAIWDHAGIRGGGQFVTNLLAEGEHVGPAAAPRALEPAAESVLPAVEDEVGKIVERVMTIVNRNLVTTRTR