Scaffold Ga0335029_0001825

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0001825
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16995
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F058947	Metagenome	134	Y
F060700	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0001825_2_220	F001477	AGGAGG	MSNVYTIHPPKSDLILFYEVVEPDGSNTWGGASAEQCIQWLSLAPANSRVLVSAWDSDEEDAHLVGQTLDITE
Ga0335029_0001825_2037_2291	F060700	N/A	MKTLRELAKEAGIDEKYFERDFLMLDQRYAIMQDEKGLHLTDVMSWASFSPRTIGRKSNATAKGLQFQLGQYKVWMRQNEQKVG
Ga0335029_0001825_213_371	F000821	AGGAGG	MNREYLKAKVDLCLNQAEIDIQQQEIANAIKNLERANLALSRIFNLEEDESE
Ga0335029_0001825_472_630	F058947	GGAG	MISCELQDLEQIMGKAGVLLTGNAYDKAQDYLQDHCVCATYNYLLGYKRGRE