Scaffold Ga0335029_0001477

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0001477
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18722
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (53.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025021	Metagenome / Metatranscriptome	203	Y
F029052	Metagenome / Metatranscriptome	189	Y
F067732	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0001477_16583_16762	F029052	GGAG	MNYNYLIRAELYAEARGDGMWFKNLYTGFREYNGVTDSVWKTLSYLYSNQVADMLEVQQ
Ga0335029_0001477_17846_18028	F067732	AGGA	MKITTAISQLNKERDFLGIGFLELLQDIQKHGRMVYSEKTMEAFSVFMAEGAKMFATVEE
Ga0335029_0001477_18133_18321	F025021	AGGA	MPEVRFNGPLYKVTMTEYERGYGQRPMGEKFFDNEEDAKQFCKQYFSGDSECYFRAEYQKVN