Scaffold Ga0335029

Basic Information
Taxon OID	3300034102 Open in IMG/M
Scaffold ID	Ga0335029_0001365 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034102 Open in IMG/M

Scaffold ID

Ga0335029_0001365 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19570
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (25.64%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19570

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (25.64%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010915	Metagenome / Metatranscriptome	297	Y
F033034	Metagenome / Metatranscriptome	178	Y
F044319	Metagenome / Metatranscriptome	154	N
F048935	Metagenome / Metatranscriptome	147	Y
F093350	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0001365_15683_15949	F093350	N/A	MLTKDQAFDINEFIDKNSHESLWRVGDKLEKTLSEFAINSNKDQIINRFLSKHGTKQVHMLNKPIFALVEDLMKVAEVAEENSELTPA
Ga0335029_0001365_4483_4797	F033034	N/A	MKVVKLTKKAQDIVNQIMSADAVDIDHGVIDERLYYGQIHLTGEGLKCDIDNGDVGELMMSNESLNAAVITYPDGTIEIDEKHFERNNWRMTITLYKLSKIAAL
Ga0335029_0001365_4806_4967	F010915	GAG	MKVKFPPHNMIVVNKVGLDLFNVSYVKYTDHDVIQLIKYDLSAEDVAQFLGNN
Ga0335029_0001365_4964_5494	F044319	N/A	MKIVDLIASQAGLARFASFTYCSKSTGEVARYTLQLGFSYRNILQKSIMELEVDKQIMTDLPRQAADEILASLNASLSGTQTKYTKKDIYEDYKVDGKTIQGLKVNKNDGSLKVFGLVTSKVQISPEVTPHKKYNSAPLTIEKNRITKTLPIGRFREFALNNLIVAKLNGETLVLE
Ga0335029_0001365_996_1547	F048935	GGAG	METKTKNLNAEFKKATKAQKRVMIAQDVLAQLKAKRYVAESGCWVRIHYNPTTVAKTDSVQELFVEKKIESCNVCALGGLFMSCTNFNNNTLLEDLDDASEGLGNLIEEEQLSNKLNKIFSTNQLKLIESYFEANGGFFRDYDEDDRIEVFYNKNSSDKKRLQLIMENIVENEGTFVPAKLKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335029_0001365

Overview

Ecosystem & Geography

Associated Families

Sequences