Scaffold Ga0335029_0000978

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335029_0000978

Scaffold Ga0335029_0000978

Overview

Basic Information
Taxon OID	3300034102 Open in IMG/M
Scaffold ID	Ga0335029_0000978 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22827
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (11.11%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039487	Metagenome	163	Y
F042338	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0000978_167_529	F039487	N/A	MNKGQVNELVLNINNNSRTDFSGYTLTFLNILSQEVKSYTISTSNPLQFAENIRYCEIVLDLFTDDLNYEGQYQLDIFGNGTTKVYTGMVRLLGTTEKGNTFTEYVSPDEDNSNYIYIEE
Ga0335029_0000978_19333_20340	F042338	N/A	MVNYKQVIQDLSGIAYHNPQINSFGYGDITQLTMDIETKQEPVYMKMYVVPGQTVLAQNRLDYNFSIIICDIINADLSNQEDVMSDTLETVKDVWTILYQSYTETFGGFSIDYEPLWSSPAEPFLERYETLLGGWTLNITIEQPFDYNSCVLPISGLTLPTSVNEVTYKLILDDLKEIARAHEQINSYGFGDVAQLTLDIETEKEPLYSRMWIVPGQATLAQNEMIYNFQIIITDVVEDDYSNQRDVMNDGLEICKDIFTVLYLSEYESEWNATCDPFLERFETVLGGWTMNLQLTQPFDYNRCVLPELPFVVENKKWYELAELWNTISTVWRKV

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