Scaffold Ga0335029_0000689

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0000689
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27056
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (70.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F006885	Metagenome / Metatranscriptome	362	Y
F027449	Metagenome / Metatranscriptome	194	Y
F068817	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0000689_1140_1316	F068817	N/A	MSNVDDFLKDPWKHFNEMRKTPHVCDYNYIVDSIGGQPAFFEICKYCLDTSAVIEMDN
Ga0335029_0000689_16959_17189	F027449	N/A	MYTDKMRMAFHSINTPKNFGVKLIDNDSFLTIKLDEKSFIRMTHDEKIEAIKYVSMVKKALEIEGAIVLVTREPLK
Ga0335029_0000689_18756_19148	F006885	AGG	MEYLLVVVLTTLATWFILKISSKKGVKVFKKIVYRQSHIYEIVKDVIPKEMFEKPKMIRQSQKHIQKNMLKVVITEGKAYWTVNNVFYTANAINGRVDENTVKPLDIHNMSKKELVKMMDILDDLRKGMQ
Ga0335029_0000689_4070_4291	F004475	GAG	MKMTNWTEELTEKQKEQVWDFIVFTVKEIRDQIAVDIEGTSQLWKAKGLNKSRRTQKAFEISAAIARGQNEIQ