Scaffold Ga0335029_0000592

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0000592
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28955
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (40.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F002621	Metagenome / Metatranscriptome	542	Y
F004206	Metagenome / Metatranscriptome	448	Y
F006135	Metagenome / Metatranscriptome	380	N
F007030	Metagenome / Metatranscriptome	359	Y
F027822	Metagenome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0000592_11404_11637	F002621	N/A	MCNMAKLLNPSRMIWLLVLPICLGCQQTKVVLVPSGDPVMLAKPTTASVYAFDADKKLVGPSTVTLPAGWYVLPKSQ
Ga0335029_0000592_21476_22291	F007030	N/A	MNNPTAAINMNDPFIHAPQATAVVHEPTTSGTRPSIHVSLYAYGGISAACLMSWVGLTANFSTSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQIDHDIEFDAKDIIRMAELAHEHQATVCIPYPCRALPLRPALRIDTEHVKALRMQTSDAECATELVPIRMFASGCLAIPRRCLMSALDWLGGSEVPNPYRIDWCKDVRVDQFPTLWMPFAMDTLPGQYEYLSEDYAAAVRLSLCDVKHYAMHPKKHLNHWGEYPYGFKPYVG
Ga0335029_0000592_27374_27886	F006135	N/A	MSTHIKIENQTEVPILVALFEQPKCNDHPTRSAVLKPGESCNWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHEGDIDWANVKAMSSDDLTATFGSTYTSAKSSTKSWNGMSSCIFHVRGGPSWVEETEQVGIFRPKTIAYNGVQSTPMKSE
Ga0335029_0000592_27883_28095	F001259	GGAGG	MNQISPDTVAFIYLHAWNGAIRVESLETAKTLHDRSEWKHVATINPHVFLESILRASIKERNQIIKHLLT
Ga0335029_0000592_3214_3648	F027822	N/A	MPAEIKDIGSIYAEATAGSEAARQWLAAWHFYCHAIDDLVDGDVVLNTESMLDLLIQANSLYSMPFYIEHGIRLAPMVAQVTSTYADSVAWEKSDIEWKARISDVIRCCGNDMVLQVAWILGGYSRMRAISLSLREAAYHSQHS
Ga0335029_0000592_5901_6314	F004206	GAG	LIPLITDYLLHKLPDSFQGWTREAVEDYVMFHAEQGTLKVALQDEHVVAVLVGWRQMGPEPKEWTWQKSDPNGDHWYWHQFAADCALFAMAVAAKFFHDRPESAILPAIGYRNGKLTTYKQGSMPIYKVANKKYGIS