NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0000551

Scaffold Ga0335029_0000551


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0000551 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29709
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (77.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012451Metagenome / Metatranscriptome280Y
F026484Metagenome / Metatranscriptome197Y
F035228Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0000551_10845_11324F035228GAGMSKNQSDYDIPARKFDFHTDLKFGHKGEKLVTDFLDAMSDGSFEVKTDRYRNGRMVLEMTHNPRKKLDDEGKPLWTPSGLAITKAKWWVYVYTLDGSFVIVSTDRIKRYLKANKERFNPKKYHSFAWSSSNPSKGYLLEPEDVMDMMINTEYDEVRTNK
Ga0335029_0000551_124_840F012451AGGAGGMAYAQMTATSLRQTVRDITDLDSEDLPDSLLNLYIRDGYYRILDIEKRWTFLEKSFTFNTVAEQRAYPISAFTADPMSQIVSIVDNTGIGLRLDMVSHDEAENTYIGAYDTSGDPLFYSIWNGNIHLFPKPNNARTLTVRGYREPIDWVTDGGYVDASANLHFALVYYACSRVYQRLEDVAMADVYKRSFDEGVMLAVKSVMTPNSHANLVLSAGRTTGRPTFNGWMTRMGQGLKDNQ
Ga0335029_0000551_24730_25041F026484GAGMTTTNDAMFEALSKSYPSAGQTLGDLLYAFWSDKGLQYRGTLQTEFFVSEGTTGTTLGDLTNNYFVDVYDFVTFDVTDSDEWLELRVFDRYDTVEQEIYTLIW
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