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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034102 Open in IMG/M |
| Scaffold ID | Ga0335029_0000506 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31021 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (62.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009397 | Metagenome / Metatranscriptome | 318 | Y |
| F011368 | Metagenome | 291 | Y |
| F024772 | Metagenome | 204 | Y |
| F057142 | Metagenome | 136 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335029_0000506_13660_14844 | F057142 | AGG | MLSSEFAEDIFVEFYKLVVQQTISIQGQDFSPISSFHEKIINGSELTKNQANFLIKLLEKYKIVSAQAGIDYRPQLQDLKWRTGFRVLDLSKKIYVELREKKLEICLKFPYQLKKEFEDEIDNGKNIQAHSFWDHEQKVRRLDFYQYNLIALYEFALKHNFEIDDTFMNVLADVEEIWQNSEHAVPRSEITIYGVSLKNASEETQTWWADNRTNDPYKDLLLAKSMGFLYHEKPLNLAEKIASRSENTFWIKDNKDFFALTKLFSGRICVLLDRSSATLPWLQNFVADADKNGVSREEIKVCFRDSKDANSGLNEWIRIAEVGGRVETGKILIFESKPAKWLFKFSNDVTLLVTNNIFPPTNIMARDWFSCHPCVIYLGDTKPTETKGQKIVEL |
| Ga0335029_0000506_26803_27144 | F024772 | N/A | MRAKEFITEREMSDRKSRALNTTFEFPTMPSSDGYQAYRFGVAMANHEEPPYGPTSQHAVISAYTPEEEEIIHAAERVTGHRGRLIADRGSREPKSTETQSPVAKPKRNRYGV |
| Ga0335029_0000506_29117_29380 | F009397 | GGA | MGVDKLYGSCTAFGINIHMSEQYLLPMARNMITGQTVKTQDLTGTRFTQRQRVLAEDTARQLADRMSARTGDTWQGFVKLYTPTVRQ |
| Ga0335029_0000506_30735_31019 | F011368 | N/A | NSFSTMTHTLQHRDIAGCHLSPGDHCLVTEHNRIILARVIKVYEASNQLQLQPLSSDAGGRRSKPSLKRIRRECYNVYRIADAEITMSILRGAI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |