Scaffold Ga0335029_0000417

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0000417
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34168
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (34.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058094	Metagenome / Metatranscriptome	135	Y
F082584	Metagenome / Metatranscriptome	113	Y
F087098	Metagenome	110	N
F105025	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0000417_10590_10877	F087098	N/A	MSNPTVQIAARSSSGIVQPVQATPDGALRVTTGFALPLYDDFEVFRVGATNNTDYTEYRFSGTAVARIRFQYFGGVPTTDNAGLRRSFIQYPPFA
Ga0335029_0000417_10880_11152	F058094	N/A	MSQVSFDPLTGNMISTTAQVAQLDSSGQISGAMIPDDFDDVQRFDSVADFPAEGVVARIYFPADTNIPHRWDVDTLSYIPISSDTDGGEF
Ga0335029_0000417_12191_12553	F082584	N/A	MVLKLLRSTVPGRVPTAAQVAEGSLALNLADRRLYSKDHLGEVFRLARPRDPSDYQLLHAVDGDHLYLGRLAWADFPASGPAEDSPAWTIYRITTDSAGNVLSEQSATGAWSNKSNLQFS
Ga0335029_0000417_14645_14830	F105025	N/A	MDHHQAAASFTGLVATATGLTVSMLPEIEAWLRIASLLVGIAVGVASLYALLNKKRPPHD