NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0000275

Scaffold Ga0335029_0000275


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0000275 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41946
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (78.72%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000843Metagenome / Metatranscriptome864Y
F002130Metagenome / Metatranscriptome591Y
F002370Metagenome / Metatranscriptome566Y
F033775Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0000275_16486_17094F002130N/AMSEKPESIIDKVLTYVDSPFKLFAILVMGVVAFAGYFLWQNQTFMFDAYKESKKLPEINDARADDASSMLLKKTGATVVAVFKVNPLFNSRVLYKAYTKDGRDKTIEDIDVGLFSQNTANNADVVKLMTNEIPCGDYRYAQSEVGLWYLEKGVTFTCRVSVPPDSHRFVGQVTVGWAEPPTDIQQVKFMLEIASAMLTKRGN
Ga0335029_0000275_21932_22339F000843N/AMPLHHVHPSTLPTIWPIAFPLLKKAIDLDPEAYNPQFIEYSIRTGRVHLLVWEEPEVGITGACTIEIIDDPLERIAHVHLMGGKGVVREHVFDEAKEFMRRCGATKAQCWAKGTLVDMYKKMGLENTHQVMRVKL
Ga0335029_0000275_2310_2582F033775AGGAGMQTDVKAVSLAASGAVTDSRARLRSLVIEPGASAGSVIMKDGGSGGTTVMTLNTTAGGETFNILIPAEGVLFATSIYATLSNTKVTAFYA
Ga0335029_0000275_5203_5367F002370AGGAGMDAKTPVRKHEANMHPGAKPTKLRAGGKTNSDMLKMGRGLAKIANQKSPGRKGA
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