Scaffold Ga0335029_0000216

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0000216
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47696
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (29.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F010915	Metagenome / Metatranscriptome	297	Y
F011750	Metagenome / Metatranscriptome	287	Y
F029747	Metagenome / Metatranscriptome	187	Y
F054855	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0000216_34328_34522	F029747	AGG	MKYTLMLDTDTCTSFSTYPHTREGLDKALDRVDKVRSRDGFKCANIVSDRDGEVFALDMSLAIN
Ga0335029_0000216_35094_35279	F011750	N/A	MQKNWTPRSLRWTDSERQAKKIQSQNARQIRWLFWRESQALREEIQKEISAKLIAKREAI
Ga0335029_0000216_36882_37070	F054855	N/A	MKSPYKQLVLVEFRNCSPLIYNIISDKRIFFDKVVQHFIDTEDFNDERDSITFINEITEVKL
Ga0335029_0000216_40938_41099	F010915	AGTAG	MKQKLPPHNMVVVVQVGLDLYTLSYVKYEECDIQQYIKYDLSSEDVSQFLGNN
Ga0335029_0000216_47083_47280	F000962	N/A	MNIHVPEELKIKYPQYEFRGKQREINNRIVIEAYNPTTEQTFYYSFEEDFFWMAGQIPDYKLQKP