NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0000203

Scaffold Ga0335029_0000203


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0000203 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50061
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (47.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021943Metagenome216Y
F076071Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0000203_14190_14816F021943N/AMKTALDTELFPELCEVVHVPLHNQWVYLIQKNGSSSLRVQRALNNLMTMFNEQITDLDYVDVYVRNPRTRYISGVNTYLQHLQRDHPELDYNTAFWFARRYKFLNRHYLPQFHWLANLSQYLHKDAKIRFRNFKDFSNIVEFDSDADIVRPTPEFIKKLFENNSELDFWLFLDQILLNLAGQELTWTELMQYYKDNYPDIIKHVLPKT
Ga0335029_0000203_20682_21461F076071GGAMINQLQRTHNINKAPWHFGTNSAGQTLKWMPTDTEESFQRLVQVDEYREYFRSKGWLEPDAITYCINSQGFRSEEFDPQAASVVSLGCSYTIGLGLPEKSTWSYLVAQSLGLKNYNLAWGGTSADTCFMLAEYWVPVLKPQLVVMAAPPKHRFDLVNEDNSNKHDTYLPASEISGADTDNFIKTWFLNDRNADLNNARNRLAVEGLCSRLGIRCLTYNAHDWFAKSREEVEYARDRMHAGPKGHELFAERIINDFATIK
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