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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034102 Open in IMG/M |
| Scaffold ID | Ga0335029_0000154 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 58367 |
| Total Scaffold Genes | 100 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (52.00%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
| Associated Families | 12 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000345 | Metagenome / Metatranscriptome | 1253 | Y |
| F000744 | Metagenome / Metatranscriptome | 909 | Y |
| F003331 | Metagenome / Metatranscriptome | 493 | Y |
| F004134 | Metagenome / Metatranscriptome | 451 | Y |
| F004898 | Metagenome / Metatranscriptome | 419 | Y |
| F005478 | Metagenome / Metatranscriptome | 399 | Y |
| F007265 | Metagenome / Metatranscriptome | 354 | Y |
| F013172 | Metagenome / Metatranscriptome | 273 | Y |
| F013514 | Metagenome / Metatranscriptome | 270 | Y |
| F024290 | Metagenome / Metatranscriptome | 206 | Y |
| F027765 | Metagenome / Metatranscriptome | 193 | Y |
| F048267 | Metagenome / Metatranscriptome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335029_0000154_37088_37249 | F005478 | GAG | MYDDYDLDYSFSNDYNLDEDSYYEHYVQGDANLDEDYARDGQDYESLAYRHYA |
| Ga0335029_0000154_42626_42808 | F027765 | N/A | MNDEDIKQFMTAFEDFMQHSEIKQFNHNAWTAAKQYTDHYYEQKAAELEVTVDYYIQEFV |
| Ga0335029_0000154_43232_43435 | F000744 | GGA | MTETNVQLNVQEIGIILSALQLLEIREENRIAREYGSVPALYNKLYTVFEQMDTSQTGLRYDVVPSF |
| Ga0335029_0000154_44120_44281 | F013172 | AGGAG | MSHYWTTKLNNATSRRLEKLEKENVLINTNTHQGRKVIGYNYLELVFEESNEE |
| Ga0335029_0000154_45655_45780 | F004898 | GAGG | MDLSELIEELREIEIYGSEPADWMGFLGDDDSWVPDHELAY |
| Ga0335029_0000154_47248_47604 | F000345 | GGA | MTEPNELGKALQEWWDSDACKQLQKDLEEGKQRAVGKYFMLSEEDKLDMVQAICYIMCKAESEGTSHRGLQDTLGIYPAGFWIDNLMDVHNALWSYYHDQKKEKELKDDLDNLEDFIK |
| Ga0335029_0000154_51058_51243 | F003331 | N/A | MSLSDKDKIYYNVWSCAYRRRYAAKLKQDWELYDREHQTLLMCLKIAKWTTFDTEKRNYL |
| Ga0335029_0000154_52560_52823 | F007265 | N/A | MTFQPYNIVPGTDILHSLTDVYEFCDEVEGMTYRVELNADNGGVYIKSSEKGHEEGSKNITEDMSIGNKQLSIVVARRILELYGELK |
| Ga0335029_0000154_54396_54623 | F004134 | N/A | MTKHPTSEWEWEDTAEVAFQEWFNDLYTPYTFRCEWFYGDCAVEDLKTREDLLRKWLHSAFLTGYNTGRCSKTDE |
| Ga0335029_0000154_54790_55077 | F024290 | N/A | MYQEFGRMTLEEILEEYGQEVLDTYYELFPDKNISKFGDRCCGFVGEYQDFVLDCYHSTGSDELETLEEFMNGVFQEYYYYCEKTATGFVFYNER |
| Ga0335029_0000154_56235_56396 | F013514 | GAG | MLVDSIEELQKYLDDHNITFEEYMRANMITDEERKYIDKIWMDAIYKNLGEDT |
| Ga0335029_0000154_57874_58002 | F048267 | GGTGG | MTDEEWETTLKSMNENVKKWVNEEIDKIKYSIIKDIIDKELK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |