Scaffold Ga0335029_0000136

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0000136
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61727
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (54.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F003331	Metagenome / Metatranscriptome	493	Y
F085375	Metagenome / Metatranscriptome	111	Y
F100423	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0000136_15907_16407	F085375	N/A	MISHIEPNWDIEDFYNLDYILSTHKDEDLVNQYLNSGHSREKLSMYKYQLPNPMPGCVYDYIIPQFTFLDKVAAAVNYFKPGQYLPLHTDLYGKYIEINDITSENVIRCMVMLEDNSPGQILQINDVAHCTWKSGDCFYWNYDEIHAFYNFSMKDRYAIQITGILK
Ga0335029_0000136_21459_21821	F000345	GGAG	MTKQQPNEFGKALQEWWDSDACKQLQKDNEEAKQRAVGKYFMLSEGDKCDMVQAICYIMCKAEEEGTSHRGLQDALGIYPAGFWVDHLMEVHNALWSYYHDQKREKELKDDLESLENFIK
Ga0335029_0000136_2994_3317	F100423	N/A	MTLPQQEHNSLLATREFLKLLLDEVKYPDLPEKIRLSAKSLLEYYPQRSKIDQLYSGNTFSDIIPSNESDITDEERENNNKILNDNQTWETPGFKWKTEVEFVSAES
Ga0335029_0000136_5486_5683	F003331	N/A	MALSEKAKIYYNVWCCAYRRRYEAKIKENWDLYDGEHLTLLMCFKMKDAKWTKFDSDKTYFPVGQ