Scaffold Ga0335029_0000060

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0000060
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96445
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 134 (79.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F005558	Metagenome	396	Y
F009065	Metagenome / Metatranscriptome	323	Y
F019324	Metagenome / Metatranscriptome	230	Y
F019636	Metagenome / Metatranscriptome	228	Y
F021093	Metagenome / Metatranscriptome	220	Y
F068486	Metagenome / Metatranscriptome	124	Y
F096495	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0000060_19015_19641	F021093	AGGAGG	VSNPFIIAEDLALKTHITGLTVSDEKNAARVVKVWFGYPDVEVRSQDFPFITIDLVDVVPANDRQHQGLVNDSDYRGTIAPIANKSFTYEMPVAYDLVYQVTSYCRHPRHDRTLMYKLADKFPSKYGKLAVPNFLGTETGYRSMFLDGFVKRDAVDGETGNRRLLRNVYMVRVISEMTPSQAASSVWAVDTVLINATTASIPIQYKPV
Ga0335029_0000060_35_400	F068486	GGAGG	MASKVKPTDVTGRAREEQVAANAEALAERAGEMSMATATSKAKLDETIDATVPDRQTVIVESTIEVGGSKDDKVEIRVIEDIENMTLGAGNNYTFKAGQKYAVTKTVAQHLKEKGYLAGV
Ga0335029_0000060_52325_52690	F019636	GGAG	MSGQQADGVYNRRAWSAPTADAPRPPQEYVGPFQSNQERLLSQSLAAWNMNGADIQQYVRPPLPQIKLFPPRFGYTEDEISIEDIIALPRNIATTQRNESDFSQTPNSTQSSSRNTLGGA
Ga0335029_0000060_53283_53489	F003439	AGAAG	MTVRKARSENAELLEGATDGKYRKRRPNTTVDPGMGDQEVIKNRAGLHPYMNYGFINSEEPAKVNPGK
Ga0335029_0000060_64107_64250	F005558	N/A	MSKDQESISWGELAELTHATQVERFNWCSCEEQEDFPYPDCPKEVSA
Ga0335029_0000060_67909_68067	F019324	GAG	MLGYTKADLDDMVTAIESALTTVNDTDDPWLHGNLTMATVFLNGLWAEGYFD
Ga0335029_0000060_89773_90018	F009065	AGG	MMFFNKKPQTWDKPFSEKVAKRVSKIPTAELEMWVDQAIYEVGRCLSGFSKSREQVFLEEARTGAEALHAVVEELYKRNTR
Ga0335029_0000060_92280_92591	F096495	AGGAG	MALIRGQEVKAGPTQYPANPKMYNTIVVQAKSRFAKYPSPAAGHWVHAKYTQMGGKFVSSKREVDPRFRDYVKEEQDKKEAEQKKKVTKPVGRGMVAGESFRK