Scaffold Ga0335029_0000028

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0000028
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 165460
• Total Scaffold Genes: 227
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 99 (43.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006610	Metagenome / Metatranscriptome	369	Y
F008051	Metagenome	340	Y
F013175	Metagenome / Metatranscriptome	273	Y
F025738	Metagenome / Metatranscriptome	200	Y
F082395	Metagenome / Metatranscriptome	113	Y
F090060	Metagenome / Metatranscriptome	108	Y
F102573	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0000028_121256_121762	F013175	N/A	MDSKTLIKALKVAVREVIKEELTEILREGLQSTITEMKQPKRTTNLPGHRNPPPPPKKKSTVQFTENKWASILNETDALVEQAPLAMNSFSDLMNEGVDDLSFTSADAQGFGMMRQNMQQAMGLAPQTPTVMEDPETGKTYEVAPEVQKALTRDYSALMKAVNKKKGL
Ga0335029_0000028_125874_126038	F025738	N/A	MKKSKRAPLPKGFKKLQCKYCDTISERVDVNATAITCWKCTLKLVNGETLELRK
Ga0335029_0000028_126050_126229	F006610	AGGA	MAHYKYKAKITDDIEDAREIIRNTGRMLTEGKIDKDSALDNLARALTKLDSARYYIDRE
Ga0335029_0000028_149399_149770	F082395	GAG	MRIRINNIECRFDQGRYEIVKWQPNHYYGKLAEYLEGGWVSDGEFLRLNNTAIQETVFDRPEGCYTVATLHYDDDEACCDLNTVGARLLELDQKDRADFFAVYEYAEDRIKAEELARTEEPEF
Ga0335029_0000028_47440_47673	F008051	N/A	MIEFIGWVSTALVLLGYISNAKGYPMFAMIAWIIGDIGWVSYDLYINNISHLVLSFVIISINLYGIIRILHNKEITK
Ga0335029_0000028_5138_5524	F090060	N/A	MGKRSVYSGESAKDRSINLMDKFITKNANREKNHPILPARRKDPNIALELWPLKDQIEYWETRTDADRFDEQYSAYSTWYDDLKQRSGVYPSTFLDFTSKLKTEMREMWERKMHPKHAIIELRKKGVY
Ga0335029_0000028_7407_8075	F102573	N/A	MYDLKFELIRPTYRDIQISKPLPEDVAEHVLMNYTCHVDHEGFDLNEIEQEYYKHNGVSLEHDTTWYKDGEASNGAHAIILPWFTQTEQSSLILDHSQFVFRHPIVGDAAEQIKRYAKRRPELLRVLSAEFKCGLDLCIDYITEDRVYPVVHIEWDYLHVNEMLPDIDYVEHVLQNIDWNHIVPTVMRFNYMSKNNLDAFQQADFRSMLLFGRKSYKLIPTL