NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0266103

Scaffold Ga0335027_0266103


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0266103 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1176
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009202Metagenome / Metatranscriptome321N
F010908Metagenome / Metatranscriptome297Y
F025437Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0266103_3_341F025437N/AMRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFEAMEQELNKL
Ga0335027_0266103_341_568F010908GAGGMRQIFSPFQKYECFAVDGVDYLVVDYTIIQDKDDNLVEWASEMKFKRLSDHKHFTMPITKIITNYNEGRAKRCKC
Ga0335027_0266103_565_876F009202N/AMYPSDDTHDLYIREKQLMLAGTAMWLAKQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANAKLRVDSEQMHYEIQRLQGIIEDNL
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