NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0210640

Scaffold Ga0335027_0210640


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0210640 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1372
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006215Metagenome / Metatranscriptome378Y
F039051Metagenome / Metatranscriptome164Y
F058003Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0210640_1116_1364F006215N/AMEIVGYKYTNEQDAINAREQIDSYYGIPVSPDDVTQNWVNYQTAEYDTPIFWYIIFDDSLKAVLGEPETFEVTTPPFPPIEN
Ga0335027_0210640_159_380F058003N/AMAKKNLKVEVDTENIDVKVERKDGEVKVDYDSKNLDVKVEKTAEGSEVKVEANGGFFKLVGKILKKVLLRRIK
Ga0335027_0210640_895_1110F039051N/AMIDITKFLEIIKKQGATGVLALWLWYTHSEVQELKHRLYDCYGKGNSSAVHQDVNDTSKYAVIPKDEINEE
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