Scaffold Ga0335027_0207681

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0207681
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1385
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F042341	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0207681_1092_1385	F003583	GGA	MAKAKQLPSGSGNLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDIGWALAVGCLGVGVAVF
Ga0335027_0207681_441_758	F042341	N/A	MSKPPRKSDPPAVKYAEPHFTFRILGKVKPSHDPKCKTPFGYCWKGYGDIHVDPRQPEHELIDTVVHELIHDTYPFLDEDAVEAGATRIAESLWRMGYRRTVINP
Ga0335027_0207681_755_1129	F001923	N/A	MSASPINPEEIPPEVKDGVVAAVLGGLAMVSRLLMSTEPVSIGWVVRRVTAAAITAALVGYGIQDQIQSPGLRMGVIGACGYCAPEIMDWVVRYVKARGEKEVAAIAGKPKSNGKGKAVTKRKR