NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0183757

Scaffold Ga0335027_0183757


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0183757 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1501
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028738Metagenome / Metatranscriptome190N
F097320Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0183757_1079_1414F097320N/AMTTQDRLAAALRRLQTEARSLSAYQTAFVTQADIHRVSIDGDRLLSILAITDATRIDDINDMVELRERLNIVRADLASLLVSVQNLHEKAEEMDKTLTDAENLVDNPDEGL
Ga0335027_0183757_499_834F028738AGGVTTSTTHGTGQPINVILPDHTIVLMWIVKTEAIRQFSITDMNQAEVELADFEAVILAKQAKHIPTFAGATFELNGNAYVIDAVSQSAADVIKRQSIHLKKIWVSARSFFPA
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