NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0165067

Scaffold Ga0335027_0165067


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0165067 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1610
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007855Metagenome / Metatranscriptome343N
F044982Metagenome153N
F057194Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0165067_1278_1610F057194N/AMSITVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFADHSGFYSGYRLDFTQEYGNTPAVT
Ga0335027_0165067_35_463F007855AGGMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELLKAHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQAP
Ga0335027_0165067_675_1274F044982GGAMEFDVFVGGSGKKLTDLQKEALADFGVSLADGAIENKSYAVVKKWLEGVVRLAKQNLANANAIASNSLAQSITVEPITLTDSSFVVAIKANDYWKFVDLGVKGTQKSNRAPNSPFRFKGNPIPIRPIQEWIAFKGIPLQGRDKQAANRSFAINIARKISREGLRATNFMSNAATKEMVDVLTENIAEVLGKSISVATVR
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