Scaffold Ga0335027_0123472

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0123472
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1939
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009960	Metagenome	310	Y
F021979	Metagenome	216	Y
F041197	Metagenome	160	Y
F067472	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0123472_1011_1328	F009960	N/A	MLTIENIHKINGYSLEVKGKGYYFKGWDNTTNDVTIFVLAGVSASNPLIRITLYKKGNMVFDDTQNRDCYVYGIWVDGLLFHYTKERLNTPSEFRNTIEQILNAI
Ga0335027_0123472_115_378	F041197	N/A	MKGSSKAIIKSSIKIVGTNSVLPIEIVGDFKDIPQNLHQIYMQSMLASYGSVNVYNNTEPEPKTIKEQKSEWRLNRIVDIISKAISK
Ga0335027_0123472_1329_1664	F067472	N/A	MLTIDNIQNIEGKEFEMSSGQKYVIGIVRAYYDHYSFGVFPLKENNVASIKDGIVYRLNRSRQNSRGYEMTSANSINPIVYVKPENLTLDNFVLELHIQTSIKVYANNRKH
Ga0335027_0123472_1642_1938	F021979	N/A	MLTIENINILNSKFAGTPEWQIGEMFIGSQNYVFQIHKRVGEWIIGGVKHSELTIRLHRVKVIDRYVMETGLVKQNYHGRSAYSIDRMKTITDFTMCLD