Scaffold Ga0335027_0087052

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0087052
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2414
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009503	Metagenome / Metatranscriptome	317	Y
F024931	Metagenome	204	N
F033645	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0087052_1502_1987	F024931	GGTGG	MQLTQEEEIICMLAAVKLTAESTKGTDNPQRHQKELGTFEYLVESAEAIGSEWVVAKYFDLPFNPYENKFKTKADVGNAIEVRWTKYVTGQLIIHEYDRPNDIAVLVTGQSPHYFIAGWIPVAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI
Ga0335027_0087052_1968_2129	F009503	GAGG	MDKVQFECRLCKKKTSQIVVKITDLLPEGVETIQCTVCSCMTVAQIGDSSANL
Ga0335027_0087052_646_1311	F033645	AGGCGG	MAGFLDNYEDVAARIKRFWETHPTGRIENHIVEFNAEKGFILVQTQIFKEYEDEKPSAIDYAFGNVATYNVQMKKFFCEDTVTSSIGRAIGLLLGTDKRPTRQDMEKIESISTSVAKSTADDYDPWTKKFGDVPSYKTAAEAEQSGIPSLGSSMDEVAKQLGGQLVAEAPQCSHGHMIWKQSHDGAPKSWGGYFCTERTKATQCTPRWYVLRSTGKWEPQV