NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0081575

Scaffold Ga0335027_0081575


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0081575 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2514
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060868Metagenome / Metatranscriptome132Y
F105020Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0081575_1_417F105020AGTAGGMHSHISKVLEWGFSETHDFVATLWGCVLCDETSDKPFKSEEDIDIDHTECDEDCFGCKVKGLQLNAGDAARDVPDKKWNAELASYRKARESGIQPAGTTHAHVEQAYQASETLGKAYDADTMPKAKDINTNTAAVLKEI
Ga0335027_0081575_426_695F060868AGGAGMANYTFKTPYVLEGPSGGHRLFYFAKLRKGITIVKSGSTYSQIRYAVDEDLNDYDVVYRGGYEHTVDDAAKAELIAANVGVTEANFTVQ
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