Scaffold Ga0335027_0071876

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0071876
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2719
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001129	Metagenome / Metatranscriptome	768	Y
F004519	Metagenome / Metatranscriptome	434	Y
F010758	Metagenome / Metatranscriptome	299	N
F014844	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0071876_1922_2092	F014844	N/A	MLIGYGYGYPTSMLQGGLAAGVWGAFNARATADGATAAEAAVNGCLFTRFAAIFNF
Ga0335027_0071876_2094_2369	F001129	N/A	MPTPILQQMLGQGGTMEFVDAAVSGKNYDFLVVNAAATFTVLTGTGGENLMTPYNLSGASISAGIVISGRNGGKITAVTPSAGSVIGYTFL
Ga0335027_0071876_2397_2705	F010758	N/A	LDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQVAQDFISALTNDPSEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPT
Ga0335027_0071876_358_618	F004519	N/A	MATFRKYAFPKQANADKVLALCTGSTAAVSLGVLDGLVCYDILWEADPPKEATQYETWPEPCGVHAFAGWEEQYEADYHANKPKSK