Scaffold Ga0335027_0052321

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0052321
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3298
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010832	Metagenome / Metatranscriptome	298	Y
F031076	Metagenome	183	Y
F034568	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0052321_1428_1619	F034568	GGAGG	MNVMNVKDYGVKSSWDGWRTFAYVSDGTPMGMMPITWANELFKTKKQAKTFIDDLATKNGWKR
Ga0335027_0052321_1792_1944	F031076	N/A	MKPIIIFMCLLLSGCFGAELFKLGGIGIKTGDIITVPSKIETLTKDKNDK
Ga0335027_0052321_659_877	F010832	AGGAG	MRDIKDVVAWLEEELAHFEMAVEQLNYVSKADEIRYRMAQELLAWTLGYKFDKKYLASPVRRDPLTMEQETI