NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0052321

Scaffold Ga0335027_0052321


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0052321 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3298
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010832Metagenome / Metatranscriptome298Y
F031076Metagenome183Y
F034568Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0052321_1428_1619F034568GGAGGMNVMNVKDYGVKSSWDGWRTFAYVSDGTPMGMMPITWANELFKTKKQAKTFIDDLATKNGWKR
Ga0335027_0052321_1792_1944F031076N/AMKPIIIFMCLLLSGCFGAELFKLGGIGIKTGDIITVPSKIETLTKDKNDK
Ga0335027_0052321_659_877F010832AGGAGMRDIKDVVAWLEEELAHFEMAVEQLNYVSKADEIRYRMAQELLAWTLGYKFDKKYLASPVRRDPLTMEQETI

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