Basic Information | |
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Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0052321 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3298 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010832 | Metagenome / Metatranscriptome | 298 | Y |
F031076 | Metagenome | 183 | Y |
F034568 | Metagenome | 174 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335027_0052321_1428_1619 | F034568 | GGAGG | MNVMNVKDYGVKSSWDGWRTFAYVSDGTPMGMMPITWANELFKTKKQAKTFIDDLATKNGWKR |
Ga0335027_0052321_1792_1944 | F031076 | N/A | MKPIIIFMCLLLSGCFGAELFKLGGIGIKTGDIITVPSKIETLTKDKNDK |
Ga0335027_0052321_659_877 | F010832 | AGGAG | MRDIKDVVAWLEEELAHFEMAVEQLNYVSKADEIRYRMAQELLAWTLGYKFDKKYLASPVRRDPLTMEQETI |
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