Scaffold Ga0335027_0039015

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0039015
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3916
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F046686	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0039015_1512_1688	F023834	GAGG	MSEPTVDYWRAKAELCRDLALIQIEDEETEKEAGMNLMRMTYALSMVDTFNETGEDNE
Ga0335027_0039015_1841_2086	F026864	GGAG	MTEQESTAQFVFTVVIAPANKQYDVELWDFAGTEPKQLATGQATNWRTALGEALSKIELPTDKQEKTINDVIKEGVEDEGI
Ga0335027_0039015_570_767	F046686	GGA	VRAGLTTSQTTPEVRLTELLNSLENVVDNLNFKSFTVYDTLVIATENLRVALSNIATEEAGTDTL