Basic Information | |
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Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0034225 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4218 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (100.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000821 | Metagenome / Metatranscriptome | 876 | Y |
F003212 | Metagenome / Metatranscriptome | 500 | Y |
F003863 | Metagenome | 464 | Y |
F007691 | Metagenome / Metatranscriptome | 346 | Y |
F059896 | Metagenome | 133 | Y |
F093483 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335027_0034225_2298_2468 | F059896 | AGGCGG | MNKCDKCQNMARVTVSGYLMPRYLCAFHASELCESVGDQAGAIKFAQLMAGDRVSA |
Ga0335027_0034225_2841_3011 | F093483 | GGAGG | MTVEKTYAGALVVSALVNWEGVKWLESATYYGYTVKEAKASFKDSCKRLNYEIERG |
Ga0335027_0034225_3015_3167 | F007691 | GAGG | MDTLEQLINEIYEDNYSHLDFIDNMGGDCDCHIHTTLNTIVKYRDGKEGE |
Ga0335027_0034225_3167_3331 | F003212 | GAGG | MKDKWLVTLEIDTYDGDPAKWNWDSIFVGEDDIKVIESQFKGRVLPTNEGEGNE |
Ga0335027_0034225_3425_3583 | F000821 | AGGAGG | MNREYLEAKVDLCLDQAEKNIKEEEIALAIANLKRANLALSRIFNLEEEESD |
Ga0335027_0034225_3978_4217 | F003863 | GGAGG | MESKQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANAVPEVAGRT |
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