NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0034225

Scaffold Ga0335027_0034225


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0034225 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4218
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F007691Metagenome / Metatranscriptome346Y
F059896Metagenome133Y
F093483Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0034225_2298_2468F059896AGGCGGMNKCDKCQNMARVTVSGYLMPRYLCAFHASELCESVGDQAGAIKFAQLMAGDRVSA
Ga0335027_0034225_2841_3011F093483GGAGGMTVEKTYAGALVVSALVNWEGVKWLESATYYGYTVKEAKASFKDSCKRLNYEIERG
Ga0335027_0034225_3015_3167F007691GAGGMDTLEQLINEIYEDNYSHLDFIDNMGGDCDCHIHTTLNTIVKYRDGKEGE
Ga0335027_0034225_3167_3331F003212GAGGMKDKWLVTLEIDTYDGDPAKWNWDSIFVGEDDIKVIESQFKGRVLPTNEGEGNE
Ga0335027_0034225_3425_3583F000821AGGAGGMNREYLEAKVDLCLDQAEKNIKEEEIALAIANLKRANLALSRIFNLEEEESD
Ga0335027_0034225_3978_4217F003863GGAGGMESKQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANAVPEVAGRT
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