Scaffold Ga0335027_0027556

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0027556
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4771
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015702	Metagenome	252	Y
F020863	Metagenome	221	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F046686	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0027556_1370_1687	F020863	N/A	MEEVRSLVKVLEELIQPLLEGEEVEDTYESNKRPHLVLQVGSKTYGRAWRVHFTGGSKYGSGHCEPRGFSDYLGGSKAEAAHSLRKLIAGIHTGLLIAEKKEVKA
Ga0335027_0027556_2010_2258	F026864	AGG	MMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGEEPKQLSTGQATNWRTALGEALSKIELPTDKVEKTINDLVKESAEDEGV
Ga0335027_0027556_2411_2587	F023834	GAG	MTEPTVDYWRAKAELCRDLALIQIEDEKTEKEAGMNLMRMVHALSMVDTFNEGGQDDN
Ga0335027_0027556_2577_2750	F015702	GGAGG	MTIREIELEYTVYNLVQLARKVWGDNADEYLAGRLESVITYNQMKVLIDSLKEEASE
Ga0335027_0027556_3459_3656	F046686	GGA	VKAGLTTSQITPEARLTELLNSLESVVENLNFKSFTVYDTLTIATENLRVALSNIATEEAGTDTL