Scaffold Ga0335027

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0025622 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034101 Open in IMG/M

Scaffold ID

Ga0335027_0025622 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4957
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4957

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F012447	Metagenome	280	Y
F018353	Metagenome	235	N
F023328	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0025622_2051_3280	F023328	AGG	MTVYTPTYRVTIAGVVQTSEILSGGTITYGRNDFFEATQPSYCNIELLNLNGASPVVELLDPVIIEVTNSAGTFVKLFTGEVSGVYNRFEGAGAAGKPNTLQIQAIGALGLLVKRTAGAISYPEELDGARIQRILQETLFIAWEDLSNTQTWNDFTTETWDNYGIQGIDVIDPGRYEVLARAAQIDQAYNLTDETQQSGLGYLYDTTDFEIGYADAERRITNYSTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEEAAENDSSINNYGLLQEIRRTILAQQVDAQEQAVNFVNFRGTPRTSLESVTVNLANDGMTNTVRDDLLAVSMDTLLYLDNIPIGLLVEGYFEGFCEGWTWTLGRNNLELTMSVSNSIYSTLDVQWEDYNSAIQWQNLDNSTRWLDVI
Ga0335027_0025622_238_708	F012447	GAG	MAKAIRLVPVDKDYRALLRAFSKMDDGAKNEMKQVASDLAERGARYAQGAASSAPFNNRQAIAVAQSIKISKSDKAPSFSIGGRQRVGSSAFAAGYVIMGNEFGSKQYKQFPKRSGQGGKQGWWLFKAMARFQPVIAQEWLQGYEKITSSWKSRAI
Ga0335027_0025622_3933_4151	F001805	GGAG	MATEKIMIGIDDQVIELKGADKEAFIADREATNVAIQLVEAEYKAKQDARDSAIKKLGEIAGLTKEELDAIL
Ga0335027_0025622_4681_4956	F018353	AGGA	MTKPKAKKQTIELPDVMATELVRIINTAHEDGKLITGFVACLELFDGRKKTIKIVANQDMPQHSVFGIINYAAEKYQFTMSPEEDDDDFYDP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335027_0025622

Overview

Ecosystem & Geography

Associated Families

Sequences