NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0025201

Scaffold Ga0335027_0025201


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0025201 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5005
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002621Metagenome / Metatranscriptome542Y
F005024Metagenome / Metatranscriptome414Y
F009398Metagenome / Metatranscriptome318N
F038227Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0025201_1718_1939F002621N/AMAKLPRPSKAIWLIGLLTCLGCQVAKVVLVPSGDPVMLAKPVKASVYGFDKDKKLVGPSTVTLPSGWYVLPKN
Ga0335027_0025201_2_745F005024GAGMTVDSSRFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGTPLGNINRKSKKTGKRIGKSRLLRRVHLIAQSKEAKAGRRGLYGEEMKAAASALMRKTIGSVGYLRSGVVKIIRIYNKGFTQFQSPKWKPLSKPAGYKAPKKTNAALVSLANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVATIYNQAMQRAMDDELAELTNHMTEAMLQNG
Ga0335027_0025201_3963_4193F038227N/AMISLGIALNRLFAGQAGGTDAPVLRRDVLREDEGFLWQEDGTSKLVITYGTFEFLLREDAGFLQQEDLFKIAIQAN
Ga0335027_0025201_760_1215F009398N/AMTIIGSSLQQGMAVLQQMLGAPMFIWEGSSIRCIPAMVTDANTPVPGGFQDNVASRILVKFSDWKTWDSTLVTMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR
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