Scaffold Ga0335027_0024145

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0024145
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5130
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F043888	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0024145_132_308	F001190	N/A	MSATPIGQDPNDNYFDLNKFEQLLERLEGSKGRQQRQKSLEGRRDIYTQGLASMMSNF
Ga0335027_0024145_365_1258	F043888	GAGG	MGGGGTRVEYKSPEIPRDNTFAEYLKYQQEREARAEQRADTEKAEQKAAAEARKSSGAAAYSGMRSGIESQLRQGLISYNDATSQLRDYASKYDLSPPEQDVAGLTDIYTKELLPGRRATGIESAYEETLGRKATEEEKSKALERFGQGYYSTVQDLRDSLAKGQEYQDKFNNSYLDNYYDTMYGKQATDAAGKKTGQRTFKFDKNLLPTYADATKARAGVQLPNFADTFAGTPSEIEESLQNVRDTRKYLYSAGLTNLQGEIDKETQKLKNEGSKEVAKINSFGSVASNLVSGFWS