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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0020447 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5626 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002357 | Metagenome / Metatranscriptome | 567 | Y |
| F028151 | Metagenome | 192 | Y |
| F032271 | Metagenome | 180 | Y |
| F055549 | Metagenome | 138 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0020447_1007_1300 | F055549 | N/A | MTELKSNHQQLLAIYATMTDYFMRAICFDAIPAMQLTGFLIMPNYDYMCDGEGLLIVLDLPMDHKIPHCQVCAAPLRRVYTAVPTIFKGTGWAGKDG |
| Ga0335027_0020447_1353_2012 | F002357 | GGAGG | MAFNLEDYEDVATLNKWFISNYPMGRSDISVISHDAEKGHILVQATLWRDAKDTSPAVSNIAFGSRETYIPNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMRKVETSPSFKEKLEARQNMYGKAGSKSAQIETILRDSFEADKPAPVAWSVGEVVDAIGSSIPNEPPACEHGHILKEGISKGGKPYRGYVCKAKQCDAKWAKLTANGKWYFEGGE |
| Ga0335027_0020447_2295_2507 | F028151 | GGAG | MNTWLELRNVGLDVAAVMLGIGFIYWIIYEIRDTAFQNGYWKGRAHGWEMHRRMTNIKAQSDEVFDYDKN |
| Ga0335027_0020447_5194_5403 | F032271 | N/A | MTRPIVKIHNTQTNEVIEREMNDAEFAQYEIDQAKFAADKAQAEAKAQAKVELLERLGITEDEARLLLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |