Basic Information | |
---|---|
Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0020181 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5667 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003964 | Metagenome | 459 | Y |
F007749 | Metagenome / Metatranscriptome | 345 | Y |
F010530 | Metagenome / Metatranscriptome | 302 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335027_0020181_1543_2055 | F003964 | GAGG | VAEVSTKIEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPSAVPLSGMARNWQTRSGFQMLPWIPGMKQKIAAKINTRAIKEYNGNTTNVGTFSIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQSDVMSEMEQLVKRVMDEANRETK |
Ga0335027_0020181_3_254 | F007749 | N/A | QSVSAGNQFAYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA |
Ga0335027_0020181_5229_5552 | F010530 | GGAG | MINYDLILCTNYATSLWVLVGNTYEGLDWLDTAPKPTQAELDAQWPQVDYNNQVLQVETTRRTQYEAQSDGLFFEWQRGTNTQAAWEAAVQAVKDANPYPPAPTKKK |
⦗Top⦘ |