Scaffold Ga0335027_0020101

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335027_0020101

Scaffold Ga0335027_0020101

Overview

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0020101 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5679
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029343	Metagenome	188	Y
F091426	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0020101_4179_4577	F091426	GAG	VSKPRKTTKLLKEAEYYTGVQTGQQSPETLSAYEYSRDNAPVLSKLANLKDQSPGGVNAQALPFPLQDAVLQLANLYLQTLDLKNKAATASSLALFKGKEAELKKFRAKLAGIMAAYKELASQLDVFTLAPK
Ga0335027_0020101_5007_5306	F029343	N/A	MEEPIITNKGISLYEFARWAALLEAVDIIAEKCEDRGIDFDSSEGMKYIKPLDIQDYVDNRTDALVMKIKTARNIEKQLLSIKTLQIENKLKKLETSDV

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