Scaffold Ga0335027_0016455

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0016455
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6356
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F044373	Metagenome / Metatranscriptome	154	Y
F045069	Metagenome	153	N
F081291	Metagenome / Metatranscriptome	114	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0016455_1449_1622	F081291	GGAGG	VKRIDYWKAKLKAAQAEERIRQKELNQMAKAFERALEQVDDIQKRIEDEKAKLARTE
Ga0335027_0016455_1752_2033	F045069	GGAGG	MRYLLLLLTASAMAAEPDHLTYTNDISVRTVLTQTKPNWCLGMRMAFDIDGLDRAYYGCWVPMQGFAHIEMLDGSRRVIALDKFTKPKQEATK
Ga0335027_0016455_502_690	F102853	AGG	MKELVLIYYAAIVVATVGFLAFFVPEPRRPTPAECGVSEIAPDMSTRDREVCRQLRQHRHRM
Ga0335027_0016455_687_890	F044373	N/A	MKIGGMTMLRDGYFIREEPPKIGAHYIPQFYQRVSTPEERFVQDIMLGSKPQQESPVVKLFGRLLSI
Ga0335027_0016455_859_1104	F037206	GAGG	MKCMQCGSKTHVVNTIQQPGGVRRQRRCPSCKNNAYSAEVWVAGNVMVGKSIYTNDEVALIKKKGVDARRANEDRRNDNVT