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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0013189 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7134 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027781 | Metagenome / Metatranscriptome | 193 | Y |
| F037595 | Metagenome | 167 | Y |
| F080878 | Metagenome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0013189_2516_2773 | F080878 | AGGAG | MGRVKAFYTELLGQHQSQAVEQPEVVRKMFLLLCNGQPLALYDHRDTAEYEMHICIQGDMYEGQENKYRIKTMGVVTHAYEENNE |
| Ga0335027_0013189_3485_3886 | F037595 | AGGAG | MGYRSDVAYTIRFVDDHDTNNLQSFYTFLAEAKTKPECAIALSEVIVSDKKQAFYFTAEDVKWYDSYPDVMSHHALIDLAGDWVKQVFEGKLHCRIGYVFVRIGENVEDIEERFEGDYNYDWIQVERRINMDW |
| Ga0335027_0013189_3994_4941 | F027781 | N/A | VGFDFQPTEKVMELQKPDHLISLASSAVLVSVDVNVWSATKQDRVISNEVTASKNADKSAGRYVKNLLADHPRHKAIVNYRQTIYNWVKRRTYRWNNSQDLLPSVDMPKFKAEYHEHQASFNKLLTEFIASYDGIVSDMAFKQGDMFDRNDYPAKEQLASKFGVQLFVSEVPMSDFRCGIASDIAEDLFATYSQQAQEIVSHVMVEQQSRFIEVMKSISHCCGVDEIGVDDNTGETKTKKRKIYDTTIQKAKEMCDTFKGFNLSGDPELEQARASLERALNGVTAEDIRESDAVRHAVKEDIDDILGKFSAFKCV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |