NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0012107

Scaffold Ga0335027_0012107


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0012107 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7450
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007570Metagenome348Y
F010832Metagenome / Metatranscriptome298Y
F031076Metagenome183Y
F034568Metagenome174Y
F041003Metagenome160N
F050215Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0012107_4281_4505F041003AGGAMKAWTPPTDHLDPPQPPKHYRYVWLRFDSRTKKFKYPLVRHKQLKNKKRFPFVYIKHYGKCVGVGGLILAKIKL
Ga0335027_0012107_4587_4748F031076N/AMEEMKVVVIILCLLLSGCFGAELFKLGGIGIKTGDIITVPHKIETLTKDKNDK
Ga0335027_0012107_4736_4918F034568N/AMEVEDYGVKKSWDGWRTFAYVRDGTPMGLMPITWANELFKTKQKAKDFIDDLATKNGWKK
Ga0335027_0012107_5091_5318F010832AGGAGMKDIKDVVAWLEEELAHFEMAVEQLNYVSKADEIRYRMAQELLAWTLGSKFDPKYSVSRVPCDLEHDTKAFGGRV
Ga0335027_0012107_6137_6304F007570GGAGMNEDITYIKKYIKTFNDRKLREEYRLYTSLEKPTILENYFKDFIKQEINTRGIGV
Ga0335027_0012107_6881_7432F050215N/AMGTLQLVKEVKTKSDSDFRAVTELNILTTEADKKYVKNILTQLKDTFTKLKIKYLVGQFSGGHDSGGFDSAYFADDKGEAITIPEEEKNFFRKWVDVEKIYIFENEKQKRTTFYSTTTDKSINVLEELEDILYKSDCLEEYGSFAGDFNVNGTVKLDVFTYKWQMDGNQSVEQYETISDEGKL

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