Scaffold Ga0335027

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0012107 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034101 Open in IMG/M

Scaffold ID

Ga0335027_0012107 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7450
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7450

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007570	Metagenome	348	Y
F010832	Metagenome / Metatranscriptome	298	Y
F031076	Metagenome	183	Y
F034568	Metagenome	174	Y
F041003	Metagenome	160	N
F050215	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0012107_4281_4505	F041003	AGGA	MKAWTPPTDHLDPPQPPKHYRYVWLRFDSRTKKFKYPLVRHKQLKNKKRFPFVYIKHYGKCVGVGGLILAKIKL
Ga0335027_0012107_4587_4748	F031076	N/A	MEEMKVVVIILCLLLSGCFGAELFKLGGIGIKTGDIITVPHKIETLTKDKNDK
Ga0335027_0012107_4736_4918	F034568	N/A	MEVEDYGVKKSWDGWRTFAYVRDGTPMGLMPITWANELFKTKQKAKDFIDDLATKNGWKK
Ga0335027_0012107_5091_5318	F010832	AGGAG	MKDIKDVVAWLEEELAHFEMAVEQLNYVSKADEIRYRMAQELLAWTLGSKFDPKYSVSRVPCDLEHDTKAFGGRV
Ga0335027_0012107_6137_6304	F007570	GGAG	MNEDITYIKKYIKTFNDRKLREEYRLYTSLEKPTILENYFKDFIKQEINTRGIGV
Ga0335027_0012107_6881_7432	F050215	N/A	MGTLQLVKEVKTKSDSDFRAVTELNILTTEADKKYVKNILTQLKDTFTKLKIKYLVGQFSGGHDSGGFDSAYFADDKGEAITIPEEEKNFFRKWVDVEKIYIFENEKQKRTTFYSTTTDKSINVLEELEDILYKSDCLEEYGSFAGDFNVNGTVKLDVFTYKWQMDGNQSVEQYETISDEGKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335027_0012107

Overview

Ecosystem & Geography

Associated Families

Sequences