Scaffold Ga0335027_0011383

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0011383
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7689
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F012771	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0011383_1303_1545	F001964	GGAGG	MIRNQFAPPKFKIQISGAIGWSDLKERVVRFETVEFSSRKEADRAAKELNPGEYTQGRIRVVPFEMAEDYDVYPVAERTK
Ga0335027_0011383_5009_5437	F003748	N/A	MFQVNRKDAGGRYIDAEGEYTVTLTKVEENLDPKGREVCKVTFTTSEGASITDRFLNQENTWFRVNQLVAATNHNVPDGTQVDFLGVKGSYANFLKSMIGLELAITTRFEEYEYNGEKKKTLRLKGMKAVAPVAAETEEKPF
Ga0335027_0011383_6151_6312	F012771	GAG	MTPTKPKRPTPKIFVVSDDTHFRLKQYATKKGYKLQFVADEAVSEYLKRKEQQ
Ga0335027_0011383_771_1004	F002227	N/A	MKLTIQSKTNAQTIVDLFNAIITGECETPGVTPLSIYDDDRHICSLIDADGNQILELIIEREIGDKLVQTGEPETLQ