Scaffold Ga0335027_0010740

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0010740
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7914
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010541	Metagenome / Metatranscriptome	302	Y
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y
F052398	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0010740_1339_1605	F010541	N/A	MEKNIYTVMYFGNAKRYQDLNEEIAAYSKRHAVEQVYSKMRNEDYFPEDEFSWGGYVFDCDKNLIAYPGGEGIEYDGGYFYAELKIVE
Ga0335027_0010740_3318_3776	F031483	N/A	MNILKGRVKYTAGKVFEGQYGLSINAAITLENGTDIRVYGKPDDEKLKALQKNDVVTIIHDGKSYKVAFDMVTANDLPEKVQTPTEGNNVQQAANVVPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF
Ga0335027_0010740_3751_4008	F014956	N/A	MNIHEFVINVTTTVCPSHIVEPIHLRKWWRQRGVGELEKYFVSGKAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGHEYSKRTS
Ga0335027_0010740_4005_4376	F041648	N/A	MNFLTEKMDTLPNTLTDNALTRYYELRIKYLEGEKERLSNEARADYMITLDFWIYAQRMIESYVIFHKESPHEYYYDVLKTILKNLESHNEKAEDTAINRLRLEVITRCNSAIVKCEEITAAR
Ga0335027_0010740_4401_4655	F021732	N/A	MSITKYTVKCCLDKKLGHFVHVLFSNGFGLYGQTKPHSPDDNIEVHGWTFEPHDLDLQLYPNINRFNLMPLVAENELDWVIIKD
Ga0335027_0010740_5355_6089	F052398	N/A	MNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKNILPLYGIDASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDEHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRGKMEEEQRQIEAKRKFYAEFPEMLSGFKGKSYEDVPFYWYDAAMEAGLINYAEGEKRAIWEEAQDIASKQKIQADSYIDFKSQLHRAAEESKKRAVIIAQKLAVWRIVLNKK